DVC (Data Version Control)

We use DVC to version-control large data files (models, input datasets) without storing them in Git. Git only stores small fingerprints of the data, in dvc.lock and .dvc files; the data itself lives on MinIO storage.

DVC also describes how the data is made: the pipeline in dvc.yaml is a list of stages, each a Python script with its input and output files. Most stages build the model of one water authority, and later stages combine them into the nationwide model.

In short

You only need a few commands, always run through Pixi so your access key from .env is used (see Add your access key):

Goal	Command
Download a file or folder	pixi run dvc pull <path>
Download the inputs of a stage, e.g. rwzi	pixi run dvc pull rwzi --with-deps
Rerun a stage after changing its script	pixi run dvc repro --pull rwzi
See which stages are out of date	pixi run dvc status

The sections below explain these in more detail.

Note

Existing clones may still have remote credentials in .dvc/config.local. Remove those credential fields after migrating .env from MINIO_ACCESS_KEY and MINIO_SECRET_KEY to AWS_ACCESS_KEY_ID and AWS_SECRET_ACCESS_KEY.

Pull data

Prefer pulling only the data needed for the stage you are working on. To fetch a stage and its dependencies without reproducing it, use dvc pull:

pixi run dvc pull rwzi --with-deps

To fetch the cached coupled LHM model with its results, without --with-deps, which would pull all regional models:

pixi run dvc pull run_lhm_coupled

The final cached outputs for (for example) Aa en Maas and Amstel, Gooi en Vecht can likewise be pulled directly:

pixi run dvc pull data/AaenMaas/modellen/AaenMaas_dynamic_model/
pixi run dvc pull data/AmstelGooienVecht/modellen/AmstelGooienVecht_forcing/

Only pull all tracked data when you have enough disk space (currently ~100GB), time, and just want all data local:

pixi run dvc pull

If you have local changes that you want to overwrite, add --force.

Remotes

The MinIO remote is configured in .dvc/config:

Remote	URL	Purpose
minio (default)	s3://ribasim-nl/dvc	Primary DVC cache on MinIO

Pipeline

The DVC pipeline is defined in dvc.yaml. Each stage depends on its scripts, its input data, and the src/ribasim_nl/ribasim_nl package as a whole. Every stage imports most of this package, so a change to it marks all stages as changed. That sometimes reruns a stage that did not need it, but never skips one whose code changed.

Dependencies determine the order in which stages run:

flowchart LR
    node1["bathymetry"]
    node2["bergend_aa_en_maas"]
    node3["bergend_brabantse_delta"]
    node4["bergend_de_dommel"]
    node5["bergend_drents_overijsselse_delta"]
    node6["bergend_hunze_en_aas"]
    node7["bergend_limburg"]
    node8["bergend_noorderzijlvest"]
    node9["bergend_rijn_en_ijssel"]
    node10["bergend_stichtse_rijnlanden"]
    node11["bergend_vallei_en_veluwe"]
    node12["bergend_vechtstromen"]
    node13["data/AaenMaas/aangeleverd/Eerste_levering.dvc"]
    node14["data/AaenMaas/verwerkt/1_ontvangen_data/Na_levering_202404/afwateringseenheden_WAM.dvc"]
    node15["data/AaenMaas/verwerkt/1_ontvangen_data/Na_levering_20240418.dvc"]
    node16["data/AaenMaas/verwerkt/1_ontvangen_data/wateraanvoer-10-4-2026/Inlaten_verdelen.gdb.dvc"]
    node17["data/AaenMaas/verwerkt/2_voorbewerking/AanpassinghWh/20230530AaEnMaasData.gpkg.dvc"]
    node18["data/AaenMaas/verwerkt/3_input/areas.gpkg.dvc"]
    node19["data/AaenMaas/verwerkt/3_input/ribasim_input.gpkg.dvc"]
    node20["data/AaenMaas/verwerkt/4_ribasim/areas.gpkg.dvc"]
    node21["data/AaenMaas/verwerkt/4_ribasim/hydamo.gpkg.dvc"]
    node22["data/AaenMaas/verwerkt/4_ribasim/krw.gpkg.dvc"]
    node23["data/AaenMaas/verwerkt/downloads.dvc"]
    node24["data/AaenMaas/verwerkt/model_edits.gpkg.dvc"]
    node25["data/AaenMaas/verwerkt/parameters/static_data.xlsx.dvc"]
    node26["data/AaenMaas/verwerkt/sturing/aanvoergebieden.gpkg.dvc"]
    node27["data/AmstelGooienVecht/aangeleverd/Na_levering/Wateraanvoer/afvoergebiedaanvoergebied.gpkg.dvc"]
    node28["data/AmstelGooienVecht/aangeleverd/Na_levering/vigerende_peilgebieden.gpkg.dvc"]
    node29["data/AmstelGooienVecht/modellen/AmstelGooienVecht_boezemmodel_2024_12_0.dvc"]
    node30["data/AmstelGooienVecht/verwerkt/Crossings/agv_crossings_v05.gpkg.dvc"]
    node31["data/AmstelGooienVecht/verwerkt/Feedback Formulier/feedback_formulier_AmstelGooienVecht.xlsx.dvc"]
    node32["data/AmstelGooienVecht/verwerkt/Parametrisatie_data/AmstelGooienVecht.gpkg.dvc"]
    node33["data/Basisgegevens/BGT/bgt_water.parquet.dvc"]
    node34["data/Basisgegevens/Baseline/baseline-nl_land-j23_6-v1/baseline.gdb.dvc"]
    node35["data/Basisgegevens/BuitenlandseAanvoer.dvc"]
    node36["data/Basisgegevens/Hydrotypen.dvc"]
    node37["data/Basisgegevens/KRW/krw_oppervlaktewaterlichamen_nederland_vlakken.gpkg.dvc"]
    node38["data/Basisgegevens/LHM/4.3/input/LHM_data.tif.dvc"]
    node39["data/Basisgegevens/LHM/4.3/results/LHM_433_budgets_update_makkink.dvc"]
    node40["data/Basisgegevens/OSM/lock_belgium.gpkg.dvc"]
    node41["data/Basisgegevens/OSM/osm_scheeresluis.gpkg.dvc"]
    node42["data/Basisgegevens/OSM/waterway_canal.gpkg.dvc"]
    node43["data/Basisgegevens/OSM/waterway_fairway.gpkg.dvc"]
    node44["data/Basisgegevens/OSM/waterway_river.gpkg.dvc"]
    node45["data/Basisgegevens/OSM/waterway_weir_belgium.gpkg.dvc"]
    node46["data/Basisgegevens/Onttrekkingen/onttrekkingen.gpkg.dvc"]
    node47["data/Basisgegevens/QGIS_qlr/output_controle_cc.qlr.dvc"]
    node48["data/Basisgegevens/QGIS_qlr/output_controle_vaw_aanvoer.qlr.dvc"]
    node49["data/Basisgegevens/QGIS_qlr/output_controle_vaw_afvoer.qlr.dvc"]
    node50["data/Basisgegevens/RWS_waterschaps_grenzen/Rijkswaterstaat.gpkg.dvc"]
    node51["data/Basisgegevens/RWS_waterschaps_grenzen/noordzee.gpkg.dvc"]
    node52["data/Basisgegevens/RWS_waterschaps_grenzen/waterschap.gpkg.dvc"]
    node53["data/Basisgegevens/RWZI/aangeleverd/RwziBase/Belasting.xlsx.dvc"]
    node54["data/Basisgegevens/RWZI/aangeleverd/Z-info/metingen/zinfo_20160101_20231231_influentdebieten.csv.dvc"]
    node55["data/Basisgegevens/RWZI/aangeleverd/locaties/RWZI_coordinates.geojson.dvc"]
    node56["data/Basisgegevens/Top10NL/top10nl_Compleet.gpkg.dvc"]
    node57["data/Basisgegevens/VanDerGaast_QH/spafvoer1.tif.dvc"]
    node58["data/Basisgegevens/profielen.dvc"]
    node59["data/Basisgegevens/resultaatvergelijking/koppeltabel_2026/Specifiek_bewerking_versierapportage_26062026.xlsx.dvc"]
    node60["data/Basisgegevens/resultaatvergelijking/koppeltabel_2026/Transformed_koppeltabel_versie_rapportage_26062026_Feedback_Verwerkt_HydroLogic.xlsx.dvc"]
    node61["data/Basisgegevens/resultaatvergelijking/meetreeksen_2026/Metingen_aanvoer_dag_totaal.csv.dvc"]
    node62["data/Basisgegevens/resultaatvergelijking/meetreeksen_2026/Metingen_afvoer_dag_totaal.csv.dvc"]
    node63["data/BrabantseDelta/verwerkt/1_ontvangen_data/GML/dwarsprofiel.gml.dvc"]
    node64["data/BrabantseDelta/verwerkt/1_ontvangen_data/sturing_gemalen_stuwen_22-5-2022/sturingGemalenStuwen_v2.xlsx.dvc"]
    node65["data/BrabantseDelta/verwerkt/2_voorbewerking/hydamo.gpkg.dvc"]
    node66["data/BrabantseDelta/verwerkt/3_input/areas.gpkg.dvc"]
    node67["data/BrabantseDelta/verwerkt/3_input/hydamo_toevoegen.gpkg.dvc"]
    node68["data/BrabantseDelta/verwerkt/3_input/hydamo_verwijderen.gpkg.dvc"]
    node69["data/BrabantseDelta/verwerkt/3_input/ribasim_input.gpkg.dvc"]
    node70["data/BrabantseDelta/verwerkt/4_ribasim/areas.gpkg.dvc"]
    node71["data/BrabantseDelta/verwerkt/4_ribasim/krw.gpkg.dvc"]
    node72["data/BrabantseDelta/verwerkt/model_edits.gpkg.dvc"]
    node73["data/BrabantseDelta/verwerkt/parameters/static_data.xlsx.dvc"]
    node74["data/BrabantseDelta/verwerkt/sturing/aanvoergebieden.gpkg.dvc"]
    node75["data/DeDommel/verwerkt/1_ontvangen_data/Geodata/data_Q42018.gpkg.dvc"]
    node76["data/DeDommel/verwerkt/3_input/areas.gpkg.dvc"]
    node77["data/DeDommel/verwerkt/3_input/ribasim_input.gpkg.dvc"]
    node78["data/DeDommel/verwerkt/4_ribasim/areas.gpkg.dvc"]
    node79["data/DeDommel/verwerkt/4_ribasim/hydamo.gpkg.dvc"]
    node80["data/DeDommel/verwerkt/4_ribasim/krw.gpkg.dvc"]
    node81["data/DeDommel/verwerkt/model_edits.gpkg.dvc"]
    node82["data/DeDommel/verwerkt/parameters/static_data.xlsx.dvc"]
    node83["data/DeDommel/verwerkt/sturing/aanvoergebieden.gpkg.dvc"]
    node84["data/Delfland/aangeleverd/Na_levering/Wateraanvoer/Aanvoergebied_Afvoergebied_polders.gpkg.dvc"]
    node85["data/Delfland/aangeleverd/Na_levering/Watersysteem.gdb.dvc"]
    node86["data/Delfland/modellen/Delfland_boezemmodel_2024_12_0.dvc"]
    node87["data/Delfland/verwerkt/Crossings/delfland_crossings_v08.gpkg.dvc"]
    node88["data/Delfland/verwerkt/Feedback Formulier/feedback_formulier_Delfland.xlsx.dvc"]
    node89["data/Delfland/verwerkt/Parametrisatie_data/Delfland.gpkg.dvc"]
    node90["data/Delfland/verwerkt/Splitting_basins/Opgeknipte_basin_10.gpkg.dvc"]
    node91["data/Delfland/verwerkt/Splitting_basins/Opgeknipte_basin_2.gpkg.dvc"]
    node92["data/Delfland/verwerkt/Splitting_basins/Opgeknipte_basin_9.gpkg.dvc"]
    node93["data/DrentsOverijsselseDelta/aangeleverd/Aanlevering_202311/HyDAMO_WM_20231117.gpkg.dvc"]
    node94["data/DrentsOverijsselseDelta/verwerkt/1_ontvangen_data/HyDAMO_WM_20230720.gpkg.dvc"]
    node95["data/DrentsOverijsselseDelta/verwerkt/1_ontvangen_data/extra data/Duiker_inlaat_lijn.dvc"]
    node96["data/DrentsOverijsselseDelta/verwerkt/1_ontvangen_data/extra data/Peilgebieden.dvc"]
    node97["data/DrentsOverijsselseDelta/verwerkt/2_voorbewerking/hydamo.gpkg.dvc"]
    node98["data/DrentsOverijsselseDelta/verwerkt/2_voorbewerking/meppelerdiep.gpkg.dvc"]
    node99["data/DrentsOverijsselseDelta/verwerkt/3_input/areas.gpkg.dvc"]
    node100["data/DrentsOverijsselseDelta/verwerkt/3_input/hydamo_toevoegen.gpkg.dvc"]
    node101["data/DrentsOverijsselseDelta/verwerkt/3_input/hydamo_verwijderen.gpkg.dvc"]
    node102["data/DrentsOverijsselseDelta/verwerkt/3_input/ribasim_input.gpkg.dvc"]
    node103["data/DrentsOverijsselseDelta/verwerkt/4_ribasim/krw.gpkg.dvc"]
    node104["data/DrentsOverijsselseDelta/verwerkt/fix_user_data.gpkg.dvc"]
    node105["data/DrentsOverijsselseDelta/verwerkt/model_edits.gpkg.dvc"]
    node106["data/DrentsOverijsselseDelta/verwerkt/parameters/static_data.xlsx.dvc"]
    node107["data/DrentsOverijsselseDelta/verwerkt/sturing/aanvoergebieden.gpkg.dvc"]
    node108["data/DrentsOverijsselseDelta/verwerkt/sturing/kunstwerk_in.gpkg.dvc"]
    node109["data/DrentsOverijsselseDelta/verwerkt/sturing/kunstwerk_uit.gpkg.dvc"]
    node110["data/HollandsNoorderkwartier/aangeleverd/Na_levering/20240618_peilgebieden_en_polders.dvc"]
    node111["data/HollandsNoorderkwartier/modellen/HollandsNoorderkwartier_boezemmodel_2024_12_0.dvc"]
    node112["data/HollandsNoorderkwartier/verwerkt/Crossings/hhnk_crossings_v26.gpkg.dvc"]
    node113["data/HollandsNoorderkwartier/verwerkt/Feedback Formulier/feedback_formulier_HollandsNoorderkwartier.xlsx.dvc"]
    node114["data/HollandsNoorderkwartier/verwerkt/Parametrisatie_data/Noorderkwartier.gpkg.dvc"]
    node115["data/HollandsNoorderkwartier/verwerkt/Splitting_basins/Opgeknipte_basin_3.gpkg.dvc"]
    node116["data/HollandseDelta/aangeleverd/Eerste_levering/watergangen.dvc"]
    node117["data/HollandseDelta/aangeleverd/Na_levering/Peilgebieden_HD_nalevering.dvc"]
    node118["data/HollandseDelta/aangeleverd/Na_levering/Wateraanvoer.dvc"]
    node119["data/HollandseDelta/modellen/HollandseDelta_boezemmodel_2024_12_3.dvc"]
    node120["data/HollandseDelta/verwerkt/Crossings/hd_crossings_v06.gpkg.dvc"]
    node121["data/HollandseDelta/verwerkt/Feedback Formulier/feedback_formulier_HollandseDelta.xlsx.dvc"]
    node122["data/HollandseDelta/verwerkt/Parametrisatie_data/HollandseDelta.gpkg.dvc"]
    node123["data/HunzeenAas/verwerkt/1_ontvangen_data/20230606_HyDAMO_Onze-PROF-Tabs-Definitief.gpkg.dvc"]
    node124["data/HunzeenAas/verwerkt/1_ontvangen_data/peilgebieden.gpkg.dvc"]
    node125["data/HunzeenAas/verwerkt/2_voorbewerking/hydamo.gpkg.dvc"]
    node126["data/HunzeenAas/verwerkt/3_input/areas.gpkg.dvc"]
    node127["data/HunzeenAas/verwerkt/3_input/hydamo_toevoegen.gpkg.dvc"]
    node128["data/HunzeenAas/verwerkt/3_input/hydamo_verwijderen.gpkg.dvc"]
    node129["data/HunzeenAas/verwerkt/3_input/ribasim_input.gpkg.dvc"]
    node130["data/HunzeenAas/verwerkt/4_ribasim/areas.gpkg.dvc"]
    node131["data/HunzeenAas/verwerkt/4_ribasim/krw.gpkg.dvc"]
    node132["data/HunzeenAas/verwerkt/model_edits.gpkg.dvc"]
    node133["data/HunzeenAas/verwerkt/parameters/static_data.xlsx.dvc"]
    node134["data/HunzeenAas/verwerkt/sturing/aanvoergebieden.gpkg.dvc"]
    node135["data/Limburg/verwerkt/1_ontvangen_data/20250613.dvc"]
    node136["data/Limburg/verwerkt/1_ontvangen_data/HyDAMO_2_2_Limburg_met_wasmachine_levering20230406.gpkg.dvc"]
    node137["data/Limburg/verwerkt/2_voorbewerking/hydamo.gpkg.dvc"]
    node138["data/Limburg/verwerkt/3_input/areas.gpkg.dvc"]
    node139["data/Limburg/verwerkt/3_input/hydamo_toevoegen.gpkg.dvc"]
    node140["data/Limburg/verwerkt/3_input/hydamo_verwijderen.gpkg.dvc"]
    node141["data/Limburg/verwerkt/3_input/ribasim_input.gpkg.dvc"]
    node142["data/Limburg/verwerkt/4_ribasim/krw.gpkg.dvc"]
    node143["data/Limburg/verwerkt/model_edits.gpkg.dvc"]
    node144["data/Limburg/verwerkt/parameters/static_data.xlsx.dvc"]
    node145["data/Limburg/verwerkt/sturing/aanvoergebieden.gpkg.dvc"]
    node146["data/Noorderzijlvest/verwerkt/1_ontvangen_data/20241113.dvc"]
    node147["data/Noorderzijlvest/verwerkt/2_voorbewerking/1_areas.dvc"]
    node148["data/Noorderzijlvest/verwerkt/2_voorbewerking/2_dhydro/basis/winter/nzv_boezemmodel/dflowfm.dvc"]
    node149["data/Noorderzijlvest/verwerkt/3_input/openwater.gpkg.dvc"]
    node150["data/Noorderzijlvest/verwerkt/4_ribasim/krw.gpkg.dvc"]
    node151["data/Noorderzijlvest/verwerkt/5_D_HYDRO_export/hydroobjecten.dvc"]
    node152["data/Noorderzijlvest/verwerkt/5_D_HYDRO_export/peilgebieden.dvc"]
    node153["data/Noorderzijlvest/verwerkt/model_edits.gpkg.dvc"]
    node154["data/Noorderzijlvest/verwerkt/parameters/static_data.xlsx.dvc"]
    node155["data/Noorderzijlvest/verwerkt/sturing/aanvoergebieden.gpkg.dvc"]
    node156["data/Rijkswaterstaat/aangeleverd/Matroos_debieten_2017_2022_Lobith_Monsin.xlsx.dvc"]
    node157["data/Rijkswaterstaat/aangeleverd/NIS/nis_all_kunstwerken_hws_2019.gpkg.dvc"]
    node158["data/Rijkswaterstaat/aangeleverd/NIS/nis_alle_kunstwerken_hwvn_2019.gpkg.dvc"]
    node159["data/Rijkswaterstaat/aangeleverd/bathymetrie-mask/water-mask.gpkg.dvc"]
    node160["data/Rijkswaterstaat/aangeleverd/bathymetrie.dvc"]
    node161["data/Rijkswaterstaat/aangeleverd/kunstwerken_primaire_waterkeringen.gpkg.dvc"]
    node162["data/Rijkswaterstaat/modellen/hws_2025_10_1.dvc"]
    node163["data/Rijkswaterstaat/verwerkt/basins_user_data.gpkg.dvc"]
    node164["data/Rijkswaterstaat/verwerkt/categorie_oppervlaktewater.gpkg.dvc"]
    node165["data/Rijkswaterstaat/verwerkt/kunstwerken.dvc"]
    node166["data/Rijkswaterstaat/verwerkt/kwk_media.csv.dvc"]
    node167["data/Rijkswaterstaat/verwerkt/model_user_data.gpkg.dvc"]
    node168["data/Rijkswaterstaat/verwerkt/oppervlaktewater_belgie.gpkg.dvc"]
    node169["data/Rijkswaterstaat/verwerkt/outlets.gpkg.dvc"]
    node170["data/RijnenIJssel/verwerkt/1_ontvangen_data/RegelmiddelZpWp.csv.dvc"]
    node171["data/RijnenIJssel/verwerkt/1_ontvangen_data/wrij_profielen.gpkg.dvc"]
    node172["data/RijnenIJssel/verwerkt/2_voorbewerking/hydamo.gpkg.dvc"]
    node173["data/RijnenIJssel/verwerkt/3_input/areas.gpkg.dvc"]
    node174["data/RijnenIJssel/verwerkt/3_input/hydamo_toevoegen.gpkg.dvc"]
    node175["data/RijnenIJssel/verwerkt/3_input/hydamo_verwijderen.gpkg.dvc"]
    node176["data/RijnenIJssel/verwerkt/3_input/ribasim_input.gpkg.dvc"]
    node177["data/RijnenIJssel/verwerkt/4_ribasim/areas.gpkg.dvc"]
    node178["data/RijnenIJssel/verwerkt/4_ribasim/krw.gpkg.dvc"]
    node179["data/RijnenIJssel/verwerkt/model_edits.gpkg.dvc"]
    node180["data/RijnenIJssel/verwerkt/parameters/static_data.xlsx.dvc"]
    node181["data/RijnenIJssel/verwerkt/sturing/aanvoergebieden.gpkg.dvc"]
    node182["data/Rijnland/aangeleverd/Na_levering/20260422_MerenPlassen/Rijnland_meren_plassen_diepte.geojson.dvc"]
    node183["data/Rijnland/aangeleverd/Na_levering/Wateraanvoer.dvc"]
    node184["data/Rijnland/aangeleverd/PeilgebiedPraktijk Afwatering.dvc"]
    node185["data/Rijnland/modellen/Rijnland_boezemmodel_2024_12_3.dvc"]
    node186["data/Rijnland/verwerkt/Crossings/rijnland_crossings_v05.gpkg.dvc"]
    node187["data/Rijnland/verwerkt/Feedback Formulier/feedback_formulier_Rijnland.xlsx.dvc"]
    node188["data/Rijnland/verwerkt/Parametrisatie_data/Rijnland.gpkg.dvc"]
    node189["data/Rijnland/verwerkt/Splitting_basins/Opgeknipte_basin_1.gpkg.dvc"]
    node190["data/Rijnland/verwerkt/Splitting_basins/Opgeknipte_basin_15.gpkg.dvc"]
    node191["data/Rijnland/verwerkt/Splitting_basins/Opgeknipte_basin_22.gpkg.dvc"]
    node192["data/Rivierenland/aangeleverd/Eerste_levering/OverigeGegevens.zip.dvc"]
    node193["data/Rivierenland/aangeleverd/Na_levering/Wateraanvoer.dvc"]
    node194["data/Rivierenland/aangeleverd/Na_levering/gaten.gpkg.dvc"]
    node195["data/Rivierenland/modellen/Rivierenland_boezemmodel_2024_12_0.dvc"]
    node196["data/Rivierenland/verwerkt/Crossings/wsrl_crossings_v06.gpkg.dvc"]
    node197["data/Rivierenland/verwerkt/Feedback Formulier/feedback_formulier_Rivierenland.xlsx.dvc"]
    node198["data/Rivierenland/verwerkt/Parametrisatie_data/Rivierenland.gpkg.dvc"]
    node199["data/Scheldestromen/aangeleverd/Na_levering/Oplevering_Scheldestromen_20240328/Oplevering_20240328.gpkg.dvc"]
    node200["data/Scheldestromen/aangeleverd/Na_levering/Praktijkpeilgebieden_20231204.dvc"]
    node201["data/Scheldestromen/aangeleverd/Na_levering/Wateraanvoer.dvc"]
    node202["data/Scheldestromen/modellen/Scheldestromen_boezemmodel_2024_12_0.dvc"]
    node203["data/Scheldestromen/verwerkt/Crossings/scheldestromen_crossings_v02.gpkg.dvc"]
    node204["data/Scheldestromen/verwerkt/Feedback Formulier/feedback_formulier_Scheldestromen.xlsx.dvc"]
    node205["data/Scheldestromen/verwerkt/Parametrisatie_data/Scheldestromen.gpkg.dvc"]
    node206["data/SchielandendeKrimpenerwaard/aangeleverd/Na_levering/Wateraanvoer/HyDamo_metWasverzachter_20230905.gpkg.dvc"]
    node207["data/SchielandendeKrimpenerwaard/modellen/SchielandendeKrimpenerwaard_boezemmodel_2024_12_1.dvc"]
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    node236-->node334
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    node242-->node311
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    node305-->node314
    node305-->node325
    node305-->node335
    node306-->node316
    node306-->node327
    node306-->node335
    node307-->node317
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    node309-->node319
    node309-->node331
    node310-->node320
    node310-->node332
    node311-->node322
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    node312-->node346
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    node347-->node297
    node347-->node298
    node347-->node299
    node347-->node300
    node347-->node301
    node347-->node302
    node347-->node304
    node348-->node312

Figure 1: DVC pipeline DAG (click to zoom)

Reproduce stages

During development, reproduce only the stage you are working on. The --pull option asks DVC to fetch missing dependencies before running the stage with dvc repro:

pixi run dvc repro --pull rwzi

Without --pull, dvc repro only uses data already present in the workspace or local DVC cache. Other useful options are --force to run a stage even when DVC considers it unchanged and --single-item to run only the named stage without reproducing its upstream dependencies.

Warning

A full pixi run dvc repro runs all stages one by one and takes several days. Run full reproductions in parallel instead, on a workstation with pixi run repro-local, see Running locally, or on the SLURM cluster with repro.sh, see Running on SLURM.

Pushing changes

After producing new outputs (running pipeline stages or adding new data), push to the remote:

pixi run dvc push

Do this before pushing the updated dvc.lock file to Git, so the data hashes referenced therein are available to everyone.

Most MinIO access keys handed out are read-only. Reach out if you need help uploading data. See Reproducing pull requests for how the full runs of pull requests and of main are recorded.